BioX::Seq ========= [![Build Status](https://travis-ci.org/jvolkening/p5-BioX-Seq.svg?branch=master)](https://travis-ci.org/jvolkening/p5-BioX-Seq) [![Coverage Status](https://coveralls.io/repos/github/jvolkening/p5-BioX-Seq/badge.svg?branch=master)](https://coveralls.io/github/jvolkening/p5-BioX-Seq?branch=master) [![CPAN version](https://badge.fury.io/pl/BioX-Seq.svg)](https://badge.fury.io/pl/BioX-Seq) BioX::Seq is a simple sequence class that can be used to represent biological sequences. It was designed as a compromise between using simple strings and hashes to hold sequences and using the rather bloated objects of Bioperl. Features (or, depending on your viewpoint, bugs) include auto-stringification and context-dependent transformations. It is meant be used primarily as the return object of the BioX::Seq::Stream and BioX::Seq::Fetch parsers, but there may be occasions where it is useful in its own right. BioX::Seq::Stream and BioX::Seq::Fetch can be used to read in sequence objects in a streaming or random-access fashion from FASTA and FASTQ files. INSTALLATION ------------ To install this module, run the following commands: git clone https://github.com/jvolkening/p5-BioX-Seq.git cd p5-BioX-Seq perl Build.PL ./Build ./Build test ./Build install Or, with cpanminus: cpanm BioX::Seq Or, with conda: conda install -c bioconda perl-biox-seq SUPPORT AND DOCUMENTATION ------------------------- After installing, you can find documentation for this module with the perldoc command. perldoc BioX::Seq LICENSE AND COPYRIGHT --------------------- Copyright (C) 2014-2020 Jeremy Volkening This library is free software; you can redistribute it and/or modify it under the terms of the GNU Library General Public License as published by the Free Software Foundation; either version 3 of the License, or (at your option) any later version. This library is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the LICENSE file in the top-level directory of this distribution for the full license terms.